NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211524_1004983

Scaffold Ga0211524_1004983


Overview

Basic Information
Taxon OID3300020291 Open in IMG/M
Scaffold IDGa0211524_1004983 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000315 (ERX556069-ERR599031)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2847
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_037
CoordinatesLat. (o)20.8188Long. (o)63.6158Alt. (m)Depth (m)600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007004Metagenome / Metatranscriptome360Y
F010942Metagenome / Metatranscriptome297Y

Sequences

Protein IDFamilyRBSSequence
Ga0211524_10049833F007004N/AMKHLILGFCLIVFVGCANSNAYERPTVRIVGEAQMTKLPNGNYEVTPRWIKDRFNAENSMLKQLEDCREDGK
Ga0211524_10049834F010942AGGAMESNKVKFCDEHQSRASETQILGIRKDIEHLKYVINELEKECEFVKDHFTTKNGDRLDDVKVLHGRIEQRQQADLEFHENVRKKVSDRFDTLDERIRQLDKWKWATWGALMMVGALVGYFFPISLK

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