NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211524_1001219

Scaffold Ga0211524_1001219


Overview

Basic Information
Taxon OID3300020291 Open in IMG/M
Scaffold IDGa0211524_1001219 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000315 (ERX556069-ERR599031)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7330
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_037
CoordinatesLat. (o)20.8188Long. (o)63.6158Alt. (m)Depth (m)600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007121Metagenome / Metatranscriptome357Y
F021857Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0211524_100121913F021857GGAGGMIIIEKKVVKIKVKSRFCAVCDSKVRWQCKCPNNKVMARQVKKSFHEGKRYRGKRALEYCYDTEKKDAEL
Ga0211524_10012195F007121N/AMFKTILLAIFLLFGVTTPATGNWQIVLQDKLQEPTLDKLIDWVPEEVPRTVSFYFDTDGDGKFDLKIAYSLIEAYPCNAYNCVNTITDNGDHWVLPAPGMNYFVIKKWTLYRYADDEDWRGVYRTQQWIFKHPYYDDWLREKFYLLWPDQMQ
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