Scaffold Ga0211698_1069673

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211698_1069673

Scaffold Ga0211698_1069673

Overview

Basic Information
Taxon OID	3300020290 Open in IMG/M
Scaffold ID	Ga0211698_1069673 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000749 (ERX556131-ERR599154)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	540
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_076
Coordinates	Lat. (^o)	-20.9724	Long. (^o)	-35.2742	Alt. (m)		Depth (m)	800
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012072	Metagenome / Metatranscriptome	284	Y
F016055	Metagenome / Metatranscriptome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211698_10696731	F012072	N/A	MKKYHIKIKDKVVHRTDDMKKALQVIAKIFRDGHGEVSLYGGRLGKWWNK
Ga0211698_10696732	F016055	AGG	MEEEFHIEKHGSLRKSKRLVNKRERLQIKKYLKGDSPEDFVDENDDADDIEYEEISYKN

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.