Scaffold Ga0211698_1003024

Overview

Basic Information

• Taxon OID: 3300020290
• Scaffold ID: Ga0211698_1003024
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000749 (ERX556131-ERR599154)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2336
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_076
• Coordinates
  • Lat. (^o): -20.9724
  • Long. (^o): -35.2742
  • Depth (m): 800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060978	Metagenome	132	Y
F064797	Metagenome	128	Y
F079215	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211698_10030241	F060978	N/A	MEGQDMKRKTKKMERGMIEFGADCITITLESEPWKVGRIHRVNKAGAGKHADRRTKRNRTRAAQNRTAIGESM
Ga0211698_10030242	F079215	GGAG	MQNLHSAIVSIPSDRDARPVDNFEHLTISYGGHAWPVKVPKGEFAQAHQTMTRVADTDGV
Ga0211698_10030244	F064797	GGAG	MKTLRKGDEYKRLKNSTKTDLGVIKKLVEDGWTFCDKTTWRQLRGKNK