Scaffold Ga0211619_1004730

Overview

Basic Information

• Taxon OID: 3300020288
• Scaffold ID: Ga0211619_1004730
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556132-ERR599045)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2514
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_045
• Coordinates
  • Lat. (^o): 0.0033
  • Long. (^o): 71.6428
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038719	Metagenome	165	Y
F062820	Metagenome / Metatranscriptome	130	N
F074765	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211619_10047301	F038719	AGGAG	MDSKTREKILHRCEILTYMGDDGIPCIYDQLPDDELMEDCGWVLDKAHDDLDNFQLGLTRKIINRAAARASNDMWS
Ga0211619_10047304	F074765	AGGAG	MPKTATPKQTKITVSKLSHRLSRNGWISYNCELRKGRTCLAAVDQEGVGGDERVAWNNTEHYLLIHHWILDTQRDFWREYEVENINYMVELGHKTMKDSIKEKLDLMKKFNLWEKLAKKKPKSWKEARTIQQQLDFQDDMVGAWTTVYVENKLADKYYD
Ga0211619_10047307	F062820	AGGAG	MTTTKIWSRINVGDLCVHCGRNTALGHSDMLFVDRIPADADLLDNHGNPIGVKEGYACRECIYVDEDDFFHEDNVSN