Scaffold Ga0211619

Basic Information
Taxon OID	3300020288 Open in IMG/M
Scaffold ID	Ga0211619_1001059 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556132-ERR599045)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020288 Open in IMG/M

Scaffold ID

Ga0211619_1001059 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556132-ERR599045)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6383
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (52.63%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

6383

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (52.63%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_045
Coordinates	Lat. (^o)	0.0033	Long. (^o)	71.6428	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_045

Coordinates

Lat. (^o)

0.0033

Long. (^o)

71.6428

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F047122	Metagenome	150	Y
F073646	Metagenome	120	Y
F092069	Metagenome	107	Y
F099447	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211619_100105910	F099447	GGAGG	MPKKDADKIINHCFSDLIKWTYDDAVFQLTEIFSFTDQECEQLLEEYDILSATTEEVIMNPAPNFNATAPRDVKDLAENLWQARKYISTAKKLISATALTPDDYDNQKAFQEAVVQRANVNFHFISITKYIDEMTEYTKGYVPPLKR
Ga0211619_100105911	F073646	GGAGG	MLQSEYLELAIELYDIYLANNKHPKRWLPIVELEKCKRGPGFWAKLKKMKGLYSELKPVFADYVNTQHQYRSCNTPQQWSCKFDYWLQDEYEFTKEELDELRSDRGRQSRRETSQEVTI
Ga0211619_100105918	F092069	N/A	MTTVIFEYNGKSKEIPINEIKSVNDVADAYAKLGLKTKQPIKRRLYYTLPNGKYHSFLSNKNHKYAVACTDENTGLGFGYTDDYAVAKTTAANWTNKFNNAKEGFRKFVVVDVQEVE
Ga0211619_10010593	F047122	AGGA	MKCPKCKRKAKASATKFIEYSHAQRRIRTCECGFKFITYERIEIDKQDLGQHSKQKKKDFYRKVLKDLIEDLEGRTYLEKKEDFDLWEQV
Ga0211619_10010596	F006793	N/A	MTTNRSTNEQIQERVNFAADELAKGKRAMDISKKLASKYSVSIQQARDYVRQAKPILTQSISPNDRAFIFSKVMSCLEQDRLDARKDENLKEQTKSTGGMVKMVSLLTSIDQVGSWDSAVESEGDYLFRNFSEVARKRKKYCDLDSLDNTKDSDTPF
Ga0211619_10010598	F016820	N/A	MTKKEFSYIVFSSCGDNVQEIVGVYKDLDGASYGARTALSTLFPKHGDEAKIIRCEIISTEEAKIEYEKTKPKDIFEKCEDGFCPMPTPQTQEVS
Ga0211619_10010599	F012584	N/A	MKLKPKTECFRPKMPENTFELNEDSFPTLGDSDPWGKIMVWREDVGWSVIPLADIQQYLAMKHTHWTYTPYFPYNKSVTEQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211619_1001059

Overview

Ecosystem & Geography

Associated Families

Sequences