Scaffold Ga0211619_1000870

Overview

Basic Information

• Taxon OID: 3300020288
• Scaffold ID: Ga0211619_1000870
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000161 (ERX556132-ERR599045)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7190
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_045
• Coordinates
  • Lat. (^o): 0.0033
  • Long. (^o): 71.6428
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007173	Metagenome / Metatranscriptome	356	Y
F017658	Metagenome	239	Y
F025054	Metagenome	203	Y
F033841	Metagenome / Metatranscriptome	176	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211619_100087011	F033841	AGG	MEDLKPETIKIVTPNPTNFRYSYLVTPDEYKGVKKYKAECLIKKGIVIKDEMGREVDAAEHILEQLEGLLDRWKAALKEYYPDRKFTLTKNKHGEPSLPWTTEDEYLIIKTSKKAGGVKQNGDLWTNPPVTFWANEDPLRLMTDEEKKQYEKISPMTEGQMSMKCSGYDAGANGVGIRCQPLQVIVRKHVEWTGSPDFEAAPPSSYEEKSTVSTAADF
Ga0211619_10008702	F025054	GAGG	MTRSKTATLFELDCILHRATKLTDRNFTIFPPSDEEGNLLVDETIEYYKKEIIKTINQIKTEEPQ
Ga0211619_10008704	F007173	GGAGG	MTLTKAFISRDKLMKYIHEDRDLLMGLQDDLSEMLSATGKFSITLDEILQNHLPCIPTSLFENEDDIKETYSNRIDDDDNLFIFDRDKTPNQITFNVEWLD
Ga0211619_10008706	F017658	AGGAGG	MNFMEEVNEETQAMLKQISIRKAEKKANANKRIAELKKLIKFWEQDL