Scaffold Ga0211471_1015963

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211471_1015963

Scaffold Ga0211471_1015963

Overview

Basic Information
Taxon OID	3300020287 Open in IMG/M
Scaffold ID	Ga0211471_1015963 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_A100001403 (ERX556018-ERR598969)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	963
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_031
Coordinates	Lat. (^o)	34.835	Long. (^o)	34.8033	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002137	Metagenome / Metatranscriptome	590	Y
F087331	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211471_10159632	F087331	GGAG	MKQERKWEYPEDNPYGECYYDNKVEVYYNMTSFLDDSEVHQIWEIVGKAMDRENIVTSDNEQLSVRVYDEIELPDDEEEDNYYESLSEGKEL
Ga0211471_10159633	F002137	GGA	MKVSELIEALSRYDRDDDVTFYYLKNNTLTNCQFEDLGFYGDMGVEFTIQDTY

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