Scaffold Ga0211482_1002468

Overview

Basic Information

• Taxon OID: 3300020283
• Scaffold ID: Ga0211482_1002468
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556066-ERR599155)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2386
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_032
• Coordinates
  • Lat. (^o): 23.4017
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014155	Metagenome / Metatranscriptome	265	Y
F021559	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211482_10024683	F014155	AGGAG	MNHQRFKFYKHSTEYYRSLYNTVTELEDQDIVPVLTQYPSTINRKRKSTFVKKCKSIPTKVC
Ga0211482_10024686	F021559	GGAG	MTNHAPIDQPILDILNTYNPLEIKDILLNGARRKATSHKSWDDVLEYYKEYDGYIHHYLLDSPEAWRHYGMMQAAYTMTDHTPDDQKEYIKDVFYLYLDVLAADIGHKWDLHSRPRKEIEDEVLAIELKIRKESLGVIDGGKS