Scaffold Ga0211667_1044123

Overview

Basic Information

• Taxon OID: 3300020282
• Scaffold ID: Ga0211667_1044123
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1128
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC100P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9488
  • Long. (^o): -96.0293
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002146	Metagenome	590	Y
F020878	Metagenome	221	N
F057389	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211667_10441231	F020878	GAG	MIIKLFGKQITINNKKWQQDLLAWSLLYRTEIVIAVASFILGAIIF
Ga0211667_10441234	F002146	GAGG	MIKNILNFLDYVLFLGMFYLIYLGLKHADQINQLIIELKGGVI
Ga0211667_10441235	F057389	GGA	MTTYKSAYKTTTFVEDKKINVVHHATKIIEHDVENNTIKLNNGGWYSKTTKDRMHSYLIENASYRLYQKKGNWFLDQVDKLNDYKTIKTIPYENNMILRVS