NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211667_1044123

Scaffold Ga0211667_1044123


Overview

Basic Information
Taxon OID3300020282 Open in IMG/M
Scaffold IDGa0211667_1044123 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1128
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC100P(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9488Long. (o)-96.0293Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002146Metagenome590Y
F020878Metagenome221N
F057389Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0211667_10441231F020878GAGMIIKLFGKQITINNKKWQQDLLAWSLLYRTEIVIAVASFILGAIIF
Ga0211667_10441234F002146GAGGMIKNILNFLDYVLFLGMFYLIYLGLKHADQINQLIIELKGGVI
Ga0211667_10441235F057389GGAMTTYKSAYKTTTFVEDKKINVVHHATKIIEHDVENNTIKLNNGGWYSKTTKDRMHSYLIENASYRLYQKKGNWFLDQVDKLNDYKTIKTIPYENNMILRVS

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