Scaffold Ga0211667_1039990

Overview

Basic Information

• Taxon OID: 3300020282
• Scaffold ID: Ga0211667_1039990
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1193
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9488
  • Long. (^o): -96.0293
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030088	Metagenome	186	Y
F033798	Metagenome	176	Y
F074752	Metagenome	119	Y
F082690	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211667_10399902	F033798	N/A	MMHDEPMRWQGLMMDMETNALSLLAFRTWLAAEWYEKELLKEDFPEFHFLDDDMLVLDMQHELLATLN
Ga0211667_10399903	F030088	N/A	MGFKLNIVTKTKMSAKEMSRTLITLNQSEVFNFYGKLFVPFSAMSVVFNSKGATKRFDKDLDVLVHPTRGRLFQVPKEVEQFITVV
Ga0211667_10399904	F074752	N/A	MKIIETGTASISFDQEGDAYFMTDDLVYYLSEFMKSESEFDGVTHIANTGGIGIKVNEANEEVEYTFFTISP
Ga0211667_10399905	F082690	AGCAG	MSKECVMCGGDAGEYGNNPAPLHNEGVCCDECNTEVVMARILINRICR