Scaffold Ga0211667_1020726

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211667_1020726

Scaffold Ga0211667_1020726

Overview

Basic Information
Taxon OID	3300020282 Open in IMG/M
Scaffold ID	Ga0211667_1020726 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1722
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_100
Coordinates	Lat. (^o)	-12.9488	Long. (^o)	-96.0293	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029784	Metagenome / Metatranscriptome	187	N
F049702	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211667_10207261	F029784	N/A	MCNQIYSHPVEGYKCFANANKSHGSYFACCDLDTREIRYVTYIYDGYFMGYYLIQSAVKVTENYANCQGKIFLSSHSNKWPYYKGNDEEYTIDRQYPMQCDIPSLDEIEYSYLDSLLTAGTSK
Ga0211667_10207262	F049702	AGCAGG	MTLIDFNKDELHTIYSSLSYTRLEIGFANEKEEELYNKLTKIMDKVAKVRKMCTCKENVS

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