Scaffold Ga0211667_1012822

Overview

Basic Information

• Taxon OID: 3300020282
• Scaffold ID: Ga0211667_1012822
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2244
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9488
  • Long. (^o): -96.0293
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F002374	Metagenome / Metatranscriptome	566	Y
F013311	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211667_10128222	F013311	AGGAGG	LAFLGDFGKFFGLGSSKEVLGDVGGTIGSVIGLEGAGRKAGEFIGQATSSIGGGSNVNLSPLSTADQALEQSAVAVSQRGDVPQETSSSLGTTGGVTMQAGLGALPTAIQGIRSLAPQLGKFFGGTTGAVATGLGTGVAVNMLSGSGMSKEKPVLTQSRRNKARVRQLVNFMGIEGAASFLSQASGVTVTPNDVVMLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRPAMRRAASTTLIKN
Ga0211667_10128223	F001611	AGGAGG	MPLVQKTLTLAAGATSDNILANTNYEFIDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVSGQPFGVLNGSYVNNDLLTTGSQRNRVLVRFTNDTASTRTIRCGVFIG
Ga0211667_10128225	F002374	N/A	MDQVLLYTSVILAVVSFFLCCYACARVGKLLNSVKGLDWDTIACLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQNNVTDIRKN