Scaffold Ga0211667_1003404

Overview

Basic Information

• Taxon OID: 3300020282
• Scaffold ID: Ga0211667_1003404
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4571
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9488
  • Long. (^o): -96.0293
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F034894	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211667_10034043	F034894	AGGAG	MNVTFNLLGGGELNIPARFISGFYKDDITGEVIVVVLGEEYIVRDSLDEIKYILGIAR
Ga0211667_10034048	F001942	N/A	MAKKTSEEHQANSRLGALGESFVQTFLLEHCDWCYKTQEKHPADLVVELGSAKYTIQVKSRRETKKGKYVFATENSRSLSEIYKHYHCDIFAFVFFDTTGKHILFKPNNTTQTYFTFDASIITPSLAMDSFKDTLDQLSSVPKINPLLK