Scaffold Ga0211667_1000735

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211667_1000735

Scaffold Ga0211667_1000735

Overview

Basic Information
Taxon OID	3300020282 Open in IMG/M
Scaffold ID	Ga0211667_1000735 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9769
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (82.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_100
Coordinates	Lat. (^o)	-12.9488	Long. (^o)	-96.0293	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F042374	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211667_100073524	F042374	GGAG	MKNTKLIFTLLTFAFVGGCSTMPIVDSRGKSSANIKGDMNRFHDDYYTCKSLVEDQTNYGWDIGKNIYNNLRWKVLWLSPKMNTRKDYINRCLEGRGYNVINK
Ga0211667_100073528	F005751	AGG	MSDIYTIDFEPSKLSHRQDELGLEFADLDTAVELMKKEEKMIIAELTLYFSKNGGYKNITELNGYIYSDKKFKDYFDRYERTLKQRNRAKIRFES

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