Scaffold Ga0211667_1000132

Overview

Basic Information

• Taxon OID: 3300020282
• Scaffold ID: Ga0211667_1000132
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23368
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (87.80%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9488
  • Long. (^o): -96.0293
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010199	Metagenome / Metatranscriptome	307	Y
F041717	Metagenome	159	N
F044797	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211667_100013224	F044797	GAG	MNREVTVGHMLFTVSVKDGDATWSVRPSEAVENKYNKVLFSGAVTEDMGDELLKLSWVIRLAEDEAKGITNV
Ga0211667_100013234	F010199	GGA	MKVEDLKLAYRRTFNTDDGEIVLSDLKARFGFETTTYSDNPYNSAFNEGQRAAVLLIVRMLTEGKEPE
Ga0211667_10001326	F041717	GGAG	VSDLKVPFALVMAMIAQVVAGTFWVSKQAHRIEHLEKQVADNTEWVDQLYADTDKLISFATFTENRWAAAYEEFGYTRQWGMKLLEKNDE