Scaffold Ga0211667_1000024

Overview

Basic Information

• Taxon OID: 3300020282
• Scaffold ID: Ga0211667_1000024
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX556074-ERR599169)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56468
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (91.76%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9488
  • Long. (^o): -96.0293
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009070	Metagenome	323	Y
F021014	Metagenome	221	Y
F027536	Metagenome	194	Y
F029123	Metagenome	189	Y
F032681	Metagenome	179	Y
F087042	Metagenome	110	Y
F091878	Metagenome	107	N
F100989	Metagenome	102	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211667_100002426	F091878	AGGA	MHLKQLVNDKECYEQFQKHIDELIHIRQRALETAHEPHVIHRQQGAIDVLRKLKLLRETVNGA
Ga0211667_100002434	F100989	AGG	MTVYFLVDSNNLVANVAEYPEGMVPDEVSSNWLSTEENIYSGKLYNKDSKTFSDKPDSLKDTEPVSQLT
Ga0211667_100002448	F032681	AGGAG	MTKKWSLENMHTVKDLAKKLNIEVGMSTSMAVEEAMTYLTMSFHKRNVDSIKAAELLRWWLSDFQDKELEYFEIRVDLAKQVRNR
Ga0211667_100002451	F087042	AGGAG	MRNIKLNVSRSVEQMCIASFRSMFVERLEDGVDLTPKYIEMLVKEHCEPYMIVTQGFTHDLLANALDYMDWEYISYHINHPVYKETKDGR
Ga0211667_100002457	F103094	GGAG	MVKKAPEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATENKPLVSFWKKGWKDDRAITLS
Ga0211667_100002459	F029123	AGGAG	MSYEVWFGQDGNWFGYHSFKHRMDAVRYELRYLKMFPKLTVEIRRREHAS
Ga0211667_100002460	F027536	GGAGG	MRVSPDGWRYKVTPIDRVINDCRRRADDAWWDGNDEEAKLHEQEQKLYEKDKEEGVLWVPNF
Ga0211667_100002464	F009070	AGGAG	MKLAVVIDVDGDIMYVPEGKVFPNFPAPKVFDNIADAEEERDKWNTGIIVDLDNNNKTVPTIRPFNDEERQRAKEREEMNRDDGTSTGQNSTQ
Ga0211667_100002470	F021014	AGGAG	MSYELKDGDVAIVISPQINEDGDWEGILRTGMVFGESKNQTAMRSAMDYALTMAAASEVLEDYPELIEYFDDARHKILKEMFPDQYAQSELELKKDREYTTEGNVIKLTKWTKTLGEA