NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211483_10237540

Scaffold Ga0211483_10237540


Overview

Basic Information
Taxon OID3300020281 Open in IMG/M
Scaffold IDGa0211483_10237540 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)606
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_032
CoordinatesLat. (o)23.4017Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001419Metagenome / Metatranscriptome698Y
F002883Metagenome / Metatranscriptome523Y
F059056Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0211483_102375402F059056N/AMTFTTNFFTTTTMTGIELFIVIGGCYAIYTVGMAIATTIDYHTYNKNEQLVKR
Ga0211483_102375403F001419N/AMNYDEILKCYNGVDDIHASTSFEFGLMNDLYYQLFYNYDYDRN
Ga0211483_102375404F002883N/AMSTLHHEDMLLDIFDQVQEAFPYLDEEKQIEIANQRFEDLLQ

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