Scaffold Ga0211483_10069601

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211483_10069601

Scaffold Ga0211483_10069601

Overview

Basic Information
Taxon OID	3300020281 Open in IMG/M
Scaffold ID	Ga0211483_10069601 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1153
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_032
Coordinates	Lat. (^o)	23.4017	Long. (^o)	37.2183	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014553	Metagenome / Metatranscriptome	262	Y
F077400	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211483_100696012	F014553	GAG	MSKKKKSQWANYKTFTLKDGTKFKALNESDAKLYREKVGEK
Ga0211483_100696013	F077400	AGG	MNDNINHFVHPVQTKEMRKNNEDPRIKVSDMLQGAKRLEGESFEDYKMRMKVEKQLTRDYLKGYLIER

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