NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211483_10051452

Scaffold Ga0211483_10051452


Overview

Basic Information
Taxon OID3300020281 Open in IMG/M
Scaffold IDGa0211483_10051452 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1351
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_032
CoordinatesLat. (o)23.4017Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F014553Metagenome / Metatranscriptome262Y

Sequences

Protein IDFamilyRBSSequence
Ga0211483_100514523F003091N/AMKPITKPGEGKKRQKYVSNEQYLEERYQISAGLQGPERQEGESFEDYKTRRRVENGLLKEYLRGVWVKDD
Ga0211483_100514524F014553N/AKKSSNWEHYKTFTLKDGTKFLARDEKDAELYRKKVGE

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