Scaffold Ga0211483_10035270

Overview

Basic Information

• Taxon OID: 3300020281
• Scaffold ID: Ga0211483_10035270
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1647
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_032
• Coordinates
  • Lat. (^o): 23.4017
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000464	Metagenome / Metatranscriptome	1105	Y
F010001	Metagenome / Metatranscriptome	310	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211483_100352701	F010001	AGG	MDKEDNLKYLKAQIGNLQVQNADYQQIVKELSDKLKLYENKYGTVFKPAKNKSNQT
Ga0211483_100352702	F000464	N/A	MKLSPKKQPKFIQFKSLPPYDNDTGLSLADDEEFWPVMGIVFAIWGAWTGIIHFIDWLTFDAVPWWAEPFTVAPAIFIMVMNEKYNSLNPLYWWPTFWGYKAKLPEEDRIMIRPLDTDRIVKQHGGPLNVYIMDYEHIKFRRKKDAVMFGLTYF