Scaffold Ga0211483_10015223

Overview

Basic Information

• Taxon OID: 3300020281
• Scaffold ID: Ga0211483_10015223
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2579
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_032
• Coordinates
  • Lat. (^o): 23.4017
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021014	Metagenome	221	Y
F045723	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211483_100152233	F021014	AGGAG	MAYEIKDGDVAIVISPELDDEGAWTGILKTGLVFGESQHPIAMRSAMDYGLTMAAASEVLEDYPELVEYFDDARHRILKEMFPKQYAESELAIAKEKEYTTDGNIIKLTKWTKTLGEA
Ga0211483_100152237	F045723	GGA	MNYCTTKGLIWPILFCVFVIVVLPVLLVDNEKYCKQSIVPCYPWNNGGLDE