Scaffold Ga0211483_10005452

Overview

Basic Information

• Taxon OID: 3300020281
• Scaffold ID: Ga0211483_10005452
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4431
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_032
• Coordinates
  • Lat. (^o): 23.4017
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F018479	Metagenome / Metatranscriptome	235	Y
F092017	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211483_100054524	F018479	AGGAG	MSTNIQGLVDRTYREYLEPMDDLQPYTLLTSSLTDSDTTVSFNGDLLTQEEEDIMEAGSIIEIGQELMLCKTLSTTLDTVDVVRGVRGTTASAHSSGATIKIAPPFPRKNVFDAVCDQIKNLYPTLFAVETKSVSAKVGYIPLSGTSDNYLVAPISAISQMTDFSAGSDETGIIYQGVAVELVDLPNPFTYTDADGNSQTITYTNNGPNKVNALQVYGVSSGHTVFVTFKKKFIEPTAEDNTLAEIGLENEYEPIIMAGVAAQIIAGRDIPTATADYITDQLSTSTFPVNSAANIRTSLLRYQNDLIEQARKDLRARYPEPVALNKITYA
Ga0211483_100054525	F092017	AGGAG	MSMLLVLKEGRNLDIESIPDQPLEPSFPIVNPDIKANDGLFALGAFGQAIFAAELVEEGA
Ga0211483_100054526	F003693	AGG	MIKSKQALIDQSADANNSLGVQAEGMLLCAIQFPAAMTGTAVTFDFALDNSTWADVKETDGTEVSYTVSAGDVVRVDPSGWAFASNGYIRVTSNGSEAADRAIILHFRHS