Scaffold Ga0211483_10003412

Overview

Basic Information

• Taxon OID: 3300020281
• Scaffold ID: Ga0211483_10003412
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5689
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_032
• Coordinates
  • Lat. (^o): 23.4017
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018189	Metagenome	236	Y
F062820	Metagenome / Metatranscriptome	130	N
F080142	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211483_1000341211	F062820	AGGAGG	MTTSTWKHINIGDTCVHCGRNTAYGHSDMLFVDRIPADADLLDDDGKPIGVREGYACRECTYVDEDDFFHEDNVSD
Ga0211483_1000341216	F080142	GGAG	MMKVGAGEFIKTNSGEVIWGSEAFIDEVFKTLYGNEYEYEVWSYNDALQKIKNLVQQVEA
Ga0211483_1000341219	F018189	GAGG	MELTKEQMKRVIEELESSYETKMLEDKFLEEIINLFKKYLNSGETK