Scaffold Ga0211483_10001096

Overview

Basic Information

• Taxon OID: 3300020281
• Scaffold ID: Ga0211483_10001096
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10484
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (63.89%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_032
• Coordinates
  • Lat. (^o): 23.4017
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F016820	Metagenome	244	Y
F018189	Metagenome	236	Y
F038719	Metagenome	165	Y
F047122	Metagenome	150	Y
F057382	Metagenome	136	N
F062820	Metagenome / Metatranscriptome	130	N
F073646	Metagenome	120	Y
F092069	Metagenome	107	Y
F099447	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211483_1000109613	F038719	AGGAG	MDSKTREKILHRCEILTYMGDDGIPCIYDQLPDDELMEDCGWVLDKAHDDLDNFQLGLTRKIINKAAARSANDMWS
Ga0211483_1000109618	F092069	N/A	MTTVIFEYNGKSKEIPINEIKSVNDVADAYAKLGLKTKQPIKRRLYYTLPNGKYHSFLSNKNHKYAVACTSKDTVLGFCYTGSYAKAKTTATNWTNKFNNAKEGFRRFVVIPVQEVE
Ga0211483_1000109621	F018189	GAGG	MELSKKQMEKVIEELESSYNSKIFDDENLIEIINLFKKYLNSGGA
Ga0211483_1000109622	F057382	GGAGG	MSKNDLTKAELKQLINTITFFQLGARTKELKTIKLKLKNQLKEMESNASI
Ga0211483_1000109623	F073646	GGAG	MLQSEYLELAIELYDIYSAHDIHHKRWLTARELEKLKGGPGFLAKIKRMKGKMSELQPVFGDYVNRQSQYRSCNTPQQWSCKFDYWLQDEYEFTKEELDELRSDRGRQIRRETSQEVTI
Ga0211483_1000109624	F099447	GGAGG	MPKKDADKIISHCFSDLIKWTYDDAVFQLTEIFSFTDQECEQLLKEYDILSATTEEVIMNPAPNFNATAPRDVKDLAENLWQARKHISDAKKLISATALTPDDYDNQKDFQEAVVQRANVNFHFISITKYIDEMSEYTKGYVPLKK
Ga0211483_1000109626	F016820	N/A	MTKKEFSYIVFSSCGDNVQEIVGVYKDLDGASYGARSALSTLFPKHGDEAKIIRCEIISTEEAKIEYEKTKPKDIFEKCEDGFCPMPTPQPQEVS
Ga0211483_1000109627	F006793	GAG	MTTNRSTNEQIQERVNFAADELAKGKRAMDISKKLASKYNVSIQQARDYVRQAKPILTQSISPNDRAFIFSKVMSCLEQDRLDARKEENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSARESEGDYLFRNFSEIARKKKKYGDLDSLDNSETPF
Ga0211483_1000109629	F047122	AGGA	MKCPKCKRKAKASATKFIEYSHTQRRIRTCECGFKFVTHEIIEPDKQDLGKTSKEKKKEFYRKVLLELIEDLDGRTYLEKRKEKEFRLWEQV
Ga0211483_100010966	F062820	AGGAGG	MTTSTWKHINIGDTCVHCGRSTAYGHSDMLFVDRIPADADLLDDDGKPIGVREGYACRECTYVDEDDFFHEDNVSN