Basic Information | |
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Taxon OID | 3300020281 Open in IMG/M |
Scaffold ID | Ga0211483_10000321 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20060 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (44.83%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_032 | |||||||
Coordinates | Lat. (o) | 23.4017 | Long. (o) | 37.2183 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000720 | Metagenome / Metatranscriptome | 923 | Y |
F011410 | Metagenome | 291 | Y |
F023621 | Metagenome | 209 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211483_1000032110 | F000720 | AGGAG | MTLIKENRGVRKKIPDRMMSATFALPIDGRRVVGILDYTASDTGLTPMAFWVKLKPTDSYLDRELRASGKLISRCLQHGESLKDLVDTLSQDNVIGQMANYLHKNMEDIIMGKQPEKKQRELSTDPYAMKE |
Ga0211483_1000032111 | F011410 | N/A | LIDERPKHMKDLKIKLEWSTSDLLVWVILAISIGLMIVNIVTMYNMYSVIETMWLEIQQVKETNISLYQFIEEHRNDFD |
Ga0211483_1000032112 | F023621 | GGAG | MSLTERRIENIMKVMKKAKDYDMKVIWNNKLRQLFDRRKAKAYERLEDQTRMVH |
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