NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211591_1059883

Scaffold Ga0211591_1059883


Overview

Basic Information
Taxon OID3300020280 Open in IMG/M
Scaffold IDGa0211591_1059883 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001121 (ERX556044-ERR599114)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)801
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.895Long. (o)-142.6228Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006867Metagenome / Metatranscriptome363Y
F015346Metagenome / Metatranscriptome255Y
F059941Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0211591_10598831F006867N/ALRKLHKSIQKRCRIQPGMLVKSSHRDVIDKLALVVKVSPACSFDHDYEGAEEHIFYLCEPFDGTPSFVDYVCNLEQVS
Ga0211591_10598832F059941AGCAGGVKLGTLVQFSAYGAVMDTGYVSKYDEDPEFMWVECVKTGPQRVRKDHTLLEVISEAG
Ga0211591_10598833F015346GAGGMNPEWKRYKVGDLVGVASNRVFGIITKSNYWALDEYLGGEIECVDVMFGDSVSQQYPVQYLVEMK

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