Scaffold Ga0211591_1034384

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211591_1034384

Scaffold Ga0211591_1034384

Overview

Basic Information
Taxon OID	3300020280 Open in IMG/M
Scaffold ID	Ga0211591_1034384 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX556044-ERR599114)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1086
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_125
Coordinates	Lat. (^o)	-8.895	Long. (^o)	-142.6228	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018267	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211591_10343844	F018267	N/A	SPAEKRCGLIRKFLRSLVRVGDLISFKPKSFGEDDWSNPCIVLDAYVNDDRRAGGWKDTIWIVWCDGGKFLVNPRLDDIIYLTSSSHLKG

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