Scaffold Ga0211591

Basic Information
Taxon OID	3300020280 Open in IMG/M
Scaffold ID	Ga0211591_1000057 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX556044-ERR599114)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020280 Open in IMG/M

Scaffold ID

Ga0211591_1000057 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX556044-ERR599114)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42935
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (69.49%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

42935

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (69.49%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_125
Coordinates	Lat. (^o)	-8.895	Long. (^o)	-142.6228	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_125

Coordinates

Lat. (^o)

-8.895

Long. (^o)

-142.6228

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003196	Metagenome / Metatranscriptome	501	Y
F003423	Metagenome / Metatranscriptome	487	Y
F014085	Metagenome / Metatranscriptome	266	Y
F020902	Metagenome / Metatranscriptome	221	Y
F021540	Metagenome / Metatranscriptome	218	Y
F022423	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211591_100005716	F020902	N/A	VLLEDNVDYIDDAFNEIIYNEFGVIDELDILSEQVNHIIQPTPGIIILITQEFYGKE
Ga0211591_100005723	F021540	GGA	MKVIDKIYDAVNGDKYVIETKQCWHCGKTGKVEIFTQEMFFLNQGYHVQEAVKSLNRDYREMLVTGIHPNCWIEMFGNEEE
Ga0211591_100005738	F022423	N/A	MPDLEFIAKTIHTMTENVQNKETLHKIMGTANEYAKTMKFPKSKTEWSDEQLDKYFNMIEKLVDMPVEYTQNDFDSLSLMDKLKAVGLEATDKTDGLQQPGGLVGEVVNQMEQQNKYRDDLKCPYCQAMVYDNRNSKKSDKSPDFTCSTNDPVVCGGHTGKWRKSWWLDNTDIPEEWGI
Ga0211591_100005744	F014085	AGAAG	MSLSEIREEAMQRAGGKCEWPYCNDNKWLELAHIQGIGMGGNPKRKFDINNVCILCKHHHDVYDGRQRVGASVAYRELLMGYLNRERLIT
Ga0211591_10000577	F003196	AGG	MQLQKEVLIDISANANNSSAAQCDGLLLSGVVFPAAMTGSTITFDFSFDGTTWYDVVETDGTEVSYAVSAGNVVRVDPSGWAFAATGFLRVVSNGSEAADRTINLIFKQS
Ga0211591_10000579	F003423	GGAGG	MEEFDAPGEHGVKQMRETIDRKDDTIKKLEAELASYKDKEIDNVFGTLGLSTDKGFGKALKQVYDGPVNTEAVAQFAKDEYGFEPTGTVEVTPQSEPEQVVQDDARSRVAALDANSTSDVPLDVNQQLAQVLKGASVKDSLRAKLSIMDDVKKNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211591_1000057

Overview

Ecosystem & Geography

Associated Families

Sequences