Scaffold Ga0211634_1026183

Overview

Basic Information

• Taxon OID: 3300020279
• Scaffold ID: Ga0211634_1026183
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000482 (ERX555939-ERR599017)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1506
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_068
• Coordinates
  • Lat. (^o): -31.0136
  • Long. (^o): 4.6932
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F000896	Metagenome / Metatranscriptome	845	Y
F059023	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211634_10261832	F000896	GGAG	MTNKINMVINLSILALLIYLSVAVKQLQDKVFPDPNIMIPLQGQMMDRNELEYNIQTLLNNALKMAIQEQEND
Ga0211634_10261834	F000302	GGAGG	MVAVMSQDTKYRIADLERQKIELENRLETLGYSGNLVRMHELEQEIYEIEDTIRKLLP
Ga0211634_10261835	F059023	N/A	MLKTIEKKIQSFVEGIGGIQRQEIVHGTLYVKLDNDRDCDFIHTEIRKFYKENINPEGGVNMYAVGDEFAFDFVPADRETPVFTDEEEKGIWSEFA