Scaffold Ga0211606_1090897

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211606_1090897

Scaffold Ga0211606_1090897

Overview

Basic Information
Taxon OID	3300020278 Open in IMG/M
Scaffold ID	Ga0211606_1090897 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556076-ERR599151)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	592
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_124
Coordinates	Lat. (^o)	-9.1552	Long. (^o)	-140.5284	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037684	Metagenome	167	Y
F072373	Metagenome	121	Y
F085580	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211606_10908971	F072373	N/A	MNWTLKANQKYWNKAYQEYMNESTLSAKQVSDFIKVNPFVALTIENKAIQIMELEK
Ga0211606_10908972	F085580	GGAG	MIIRSNSTFSLVQTITDQLLLVVNSDTPGRPLRIWHISKKDEAIKEFERITK
Ga0211606_10908973	F037684	N/A	MKLNPKQKYKYIDKDLINGFVVLTGKELNEILEESYKKHMESKNES

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