Scaffold Ga0211606_1018471

Overview

Basic Information

• Taxon OID: 3300020278
• Scaffold ID: Ga0211606_1018471
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556076-ERR599151)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1567
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_124
• Coordinates
  • Lat. (^o): -9.1552
  • Long. (^o): -140.5284
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007344	Metagenome	353	Y
F032626	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211606_10184713	F007344	N/A	MTSYEQRAYDALAMKLTEAGYAYENTSWANDATASISVTCTRVITSEVEDEVQQFEFQIYIPNCDYFDPDNEYFNTYALTDEMTGHTFDFDRADEVVEHIQDCMRDVIFTN
Ga0211606_10184714	F032626	N/A	MDKEYLQTKVEALQDNLKVKHDELTEVQEQLTVARRELANANKPTLSQDDMVLLVDLLQGMFHDILNDADTSDLSPEFSIGYDNTIELDCIDMSAIEVHSGDIESVLEQVFNIVSDNS