Scaffold Ga0211606_1007252

Overview

Basic Information

• Taxon OID: 3300020278
• Scaffold ID: Ga0211606_1007252
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556076-ERR599151)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2933
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_124
• Coordinates
  • Lat. (^o): -9.1552
  • Long. (^o): -140.5284
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F032681	Metagenome	179	Y
F037208	Metagenome	168	Y
F087042	Metagenome	110	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211606_10072521	F103094	GGAG	MVKKAPEKLNIEVTLSSENSCYLGIKDYIIYVEVSQATEDKPLVSFWKKGWKDDRAVTLS
Ga0211606_100725210	F032681	GAGG	MTKAFSAENIKTVQNLAKKLNIEVGMSTSMAVEEAMTYLTMSFHKRNVDSIKAAELLRWWLSDFQDKELEYFETRVDLAKQVRNR
Ga0211606_100725211	F004493	AGCAGG	MQNMVVKNKGLDFTESQWGQLIEGNGLLIMWFIEWNKGDKQDANILEFFARKYQQSAGCEPFPLGGKVALDGKYVSRGDDDLEPYFLINTNEGVGYVYPYAIVALPRKSGGHHIVRMD
Ga0211606_100725212	F037208	AGGAG	MFVILATKPTQDGCKGFRFNFLGIKGIYRKRSIIRRWGRQEGDCMLSYHFGKRSLYIEKSANTKTRRKFRHVAG
Ga0211606_10072528	F087042	GGAG	MNIEQICIASFRSMFNERLEDGVDLTPKYIEMLVKEHCEPYMIVTQGFTHDLLANALDYMDWRYISRYLKHQVDKHMYAEEFKDGR