Scaffold Ga0211606_1003079

Overview

Basic Information

• Taxon OID: 3300020278
• Scaffold ID: Ga0211606_1003079
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556076-ERR599151)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5472
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_124
• Coordinates
  • Lat. (^o): -9.1552
  • Long. (^o): -140.5284
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006217	Metagenome	378	Y
F009070	Metagenome	323	Y
F029123	Metagenome	189	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211606_100307910	F103094	N/A	LNIEMSISSEHSCYVSVKDYAIYVEVSEATNNKPYISFWKKGWEDDRVVTLSH
Ga0211606_10030793	F009070	AGGAG	MKLAVVIDVDGDIMYVPEGKVFPNFPKPKVFDNIADAEEERDKWNTGIIVDLDDNNKTVPTIRSFDDEERRRAKEREEMNKDDGTSTGQDSTQ
Ga0211606_10030798	F029123	AGGAG	MSYEVWFGENGKWFGYHSFKYKMDAKRYKERYQKMFKSLTVEIRRRVHAS
Ga0211606_10030799	F006217	AGGA	MIELLLSVIEEPNQIHKYCMSKHDHWTGRAACVQELRHAQRKLEVERLRQFLKENPHYKYPGMALPNGKIKPLDVCWGSDKTYYIGSDKQKRSKC