Scaffold Ga0211606_1002575

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211606_1002575

Scaffold Ga0211606_1002575

Overview

Basic Information
Taxon OID	3300020278 Open in IMG/M
Scaffold ID	Ga0211606_1002575 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX556076-ERR599151)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6313
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (21.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_124
Coordinates	Lat. (^o)	-9.1552	Long. (^o)	-140.5284	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007259	Metagenome	354	Y
F098056	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211606_100257513	F098056	N/A	MTRADEIMLIAQVGDNDSMMSPLGKLKSINGGTGVLVLNFDATANVAAVTLTTGDDEFAALKALCGALNGRGRNMQSNVAVLADAAAATATVTIVPEITGCSTIA
Ga0211606_10025755	F007259	N/A	MIFDTKLRAEVKIQRDAVHQLLKHHLPKCELTLIGDSDIQLTWSCSKYSVRSTSLECDMYGDWQFVETQDECNDNYHYSTDLNVDYTSPANEVVNALMQLL

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