Scaffold Ga0211568_1039843

Overview

Basic Information

• Taxon OID: 3300020277
• Scaffold ID: Ga0211568_1039843
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001971 (ERX556102-ERR599152)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1054
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_137
• Coordinates
  • Lat. (^o): 14.1468
  • Long. (^o): -116.6821
  • Depth (m): 375

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F000659	Metagenome / Metatranscriptome	952	Y
F005685	Metagenome / Metatranscriptome	393	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211568_10398431	F000659	AGGA	MLRFKHYLKEVNPKYIVAKNPSDKKWYAMGHVGSNKWMPVSSGFKNKAQAQKWAKSQDKVDIAARGEISGA
Ga0211568_10398433	F005685	GAGG	MKKFNEYSSFEDKILATLKRGPCDLMTLSHKLKEDIMPVSSMLEHLKVYDKVEMYKEKWQIKRIKK
Ga0211568_10398434	F000245	N/A	LDRKLDKYVSDEIKKRKLARHPVNATDDYKMKKGKPAFKFPSPTGEMMIHVWLRPMAKPASKDTKAFNYQLEDK