Scaffold Ga0211509_1000100

Overview

Basic Information

• Taxon OID: 3300020276
• Scaffold ID: Ga0211509_1000100
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000075 (ERX289007-ERR315858)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16868
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_023
• Coordinates
  • Lat. (^o): 42.1874
  • Long. (^o): 17.7189
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009243	Metagenome / Metatranscriptome	321	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211509_10001007	F009243	N/A	MSNNFEYYYNTVPGKGQCRNNLIYTSLISKDKKTFCQWYYNDEQYHGGHNQVVDPNLMEEKWLREINFIQQMEMKYPQHVPEIQDIDFINKKLYLKIDGPDMWELAGCEGNDYSVVDNWEEQMLEIIQAHKDLGLYKYSMHPSSYFVVEGKLKSINYFFTYSDQDLGISLRSVMSHISEDRQADLFPKMEAAGIDVNKDTPHSQIQLLAFDSFKTNFPDEVMEKAKAIYA