Scaffold Ga0211658_1067093

Overview

Basic Information

• Taxon OID: 3300020274
• Scaffold ID: Ga0211658_1067093
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 730
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F005656	Metagenome	394	Y
F025411	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211658_10670931	F005656	AGGA	MILKDLLNLQQIVEKRAIPYDVLEFDSKHYSRSKDMTVDILDLHLTHAIRILNNYLNDDVYPRLSNRKEINDHLDVIKDNLDDIKEV
Ga0211658_10670932	F025411	N/A	MSITRVYRDRDNKIKVKKFSFEEVKKDLTKFFSHDNGISNRKDKNDTKRFIKPTADS
Ga0211658_10670933	F003531	GAG	MKRKVWTQNEIELARQLLKKHSYATVGRMLHRSKNSVIGQFYREKIMNGYKPDPFSKYTRKKEKNIYVDN