Scaffold Ga0211658_1022421

Overview

Basic Information

• Taxon OID: 3300020274
• Scaffold ID: Ga0211658_1022421
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1419
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F048640	Metagenome	148	N
F053978	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211658_10224212	F053978	GGAGG	MHINETTKQMIREIVVELFKEVASKQTFGVSDEVLMLDEHLNDWTGRKIDKYAVKVYGATLEERY
Ga0211658_10224213	F048640	AGGAG	MQPKELHAHARIKYKPTRIQKQLECRLFGKTFRSVAEAARYYELSASTAYEYHHERLHRETFPNRKRWNKWK
Ga0211658_10224215	F005813	GAGG	VKLYKNSEGVWAGTQADARKMCGKTYSTVDVPTDKPNLLKFLNLNQVGSYTSNDKQGTITGEIDTSNKSAMSWIRWSHDCMCRGQYEDAKEMLRKGLELASDRTTTSDG
Ga0211658_10224216	F006217	GGAG	VIELLLAMVEDTNQIHKYCMSKHEHWTGRASCVQELQHVQRKMEVEELRQFLKENPHYRYPGMALPNGRIKPLDVCWASSKTYGTKGVC