Scaffold Ga0211658_1007147

Overview

Basic Information

• Taxon OID: 3300020274
• Scaffold ID: Ga0211658_1007147
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2780
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024530	Metagenome	205	Y
F031465	Metagenome	182	Y
F054002	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211658_100714710	F031465	AGGAG	MLLNRKMVKDLRAILDDALNDNESLEQFIVEIGSANFNDTEVTFKVNLRMKGAKSQSEKDLEDFASIDKLDLTKVATLDGKQFKLSGFRRKARSKPYLIQDQKGGGEYIITADTAKRYFGKEVA
Ga0211658_10071477	F054002	AGGA	MKTIKIEPKDRVALLKYVNVLREFSCNTAEKVPIYYEHVCDIESLMYKLANLLQFEQPSEGGWYRDYQFKEHLPKEKNDE
Ga0211658_10071478	F024530	GGAG	VPKKVKQPKPRNPVFIRKATITINDKREKVAKRRHQHEMFQAKLLRKELKNEDN