Scaffold Ga0211658_1004041

Overview

Basic Information

• Taxon OID: 3300020274
• Scaffold ID: Ga0211658_1004041
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3814
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005353	Metagenome	403	Y
F020188	Metagenome / Metatranscriptome	225	Y
F025298	Metagenome	202	N
F030558	Metagenome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211658_10040411	F025298	N/A	MSPMKKQRIVSAVRRVQDKVIVSYTDGTTKEFTVNEWLYSYGEGRRLWEQHEREFKNPENFD
Ga0211658_10040413	F020188	AGGAG	MTDIKKYKSVAISIDTYKRAKPIAEQNYMSMASFIRYLVDKEQDRPTLKNGDDHGRQQR
Ga0211658_10040415	F030558	AGGA	MGRDKQKVGDVNELKATIKFLKEGYWVFRNVSPKGPIDMVIVNEETGEVRLIDVKTTNYRQSWKPGTKIHRQRTPEQIKLKVEHVFMEKDDDV
Ga0211658_10040418	F005353	N/A	MFTIDTALKQVGVTEKQVRRIRAELPKLNREKVDQQLKILLLDLQLLTNDLRSINKKEKDED