Basic Information | |
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Taxon OID | 3300020274 Open in IMG/M |
Scaffold ID | Ga0211658_1001732 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6071 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_102 | |||||||
Coordinates | Lat. (o) | -5.254 | Long. (o) | -85.2248 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F083412 | Metagenome | 113 | N |
F088821 | Metagenome | 109 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211658_10017321 | F083412 | N/A | LDYDSGSPVWLCADFNRSPHCWALLQVKKARNGLKQYIVFDEIFSKEALTTEQALKAVQLLKKWDISRVLLSGDNTSNQKSGNYGRVGKNDWDYVREIFDQNQISYKNELDIQNPRRKVRVDKINNVIYAGINGERRLLINTRCEHTIKDYMYSIVNDKGIKIDNGDRGHMSDATDYAIWRNEKTSSTPMYVLR |
Ga0211658_10017327 | F088821 | N/A | MIDLSKIYSVPKDVAEDIVMKETRHPYYSVVLDRAKIMNSWFQSEYDEYTAISSTVFSDKSYIIEQSTIESDDEYKERLGRMKLFPLEQKFFAAQQRIYDENNVNRMFPENKDFWKYKSGNFDDAGCSITEFYRDKVMFVKEVLGFGAVVTDLMMDGDGNPVTDNNGNVVPYNFVLRPHEIFNFQVKQGVLTLLVTRQMYYDIQNIKKFRWTAYTPEYICVYIQQNSVKKKILEIENPFGEVPATLLKGQTDANSSFVVGKPRRYSLKGMYLAASELFYDLKKGSELFGHPIPVLFDSVVRSLAGVADDDQYDSRTIKEGVGMAIIIPDEQTIPNNMLYQADMQGLQHLRDVIFGDLMSLIFSMAMVRDKSLVKSNVSGAAKRFDNVDEQGLLASTAMDMEMVENQVLRRMAKVRDEDFENYIVTYSKHYDLSSADEIFSDITEGMQYKALPLPLLVKLTAEYMRKRSMPQEDIDDVMNYFEEFGMPKSSGDLRNLLDILPTEELARQVQIGIESNSEQ |
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