Scaffold Ga0211658

Basic Information
Taxon OID	3300020274 Open in IMG/M
Scaffold ID	Ga0211658_1000383 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020274 Open in IMG/M

Scaffold ID

Ga0211658_1000383 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12995
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (68.75%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12995

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (68.75%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_102
Coordinates	Lat. (^o)	-5.254	Long. (^o)	-85.2248	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_102

Coordinates

Lat. (^o)

-5.254

Long. (^o)

-85.2248

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019562	Metagenome / Metatranscriptome	229	N
F041247	Metagenome / Metatranscriptome	160	N
F061913	Metagenome / Metatranscriptome	131	N
F084452	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211658_100038310	F084452	GGAG	MINKLIWNKVEELFYWNISVDSPINQLPFTMDFILACQKEFSMTVRDKEYPIHLGGIMDWHDKTMGDFVKEIDKQYQSNYFVAENGTSTTGVVGEIKDVNDKPITNKWNIRGDALVKRLQAMQKERPNLTILDMGCGVNEYKKHLNNVTGVDPYRKEADILCSQADFKPANDIKWDVIICFGPQNWYTYDEQYRNFMTLKNCLAPSGLLLWSHVHNYYKVFQPDHPHGHTWIHGDLEHAQKNSAFYFYDRNWKYTWYFNWTEHAVNTLAGHVGLKINKVDYDHCNLYRPPMYRIFTEMTH
Ga0211658_100038311	F061913	GGAG	MVEQGNFFVKCHNIYYNQQWLIDVLDSLKPSDWVDGTSVTGVTWTVNECRNIPYENMWKDIVENSTLDFVGSSERGVEKKKPWCFFSKLPPGGINLHYDHRRWGAVLFPVKGKFHLTPQIFATENYTEIERFNFEKSKIHDNGTPVFFDSRVLHAVPTPIDDEEERVVFSVNIHTHPTEMYERAKNGTWLSKNTENIGVSND
Ga0211658_100038312	F041247	AGGAG	MTDFYSVEAKTLKFDKEMIVDFYNTIDQTKWVHRQDKLPQYWPIDENNTFDRNHEFYKHLINNINVDVDEKRIYFSRIHPGGIPNHWDFENFTKLQFPVICDEPDNDWSKTPILMIDQFDQIVERVEHTNDTPIIYSANYMHGTAKSLKNKNDRITLVVDLKFWFERVKIKYYENTLFTNNKAFWSMA
Ga0211658_10003838	F019562	AGG	MWYHKKFKLQYDTNVFNEIIEYAERATWRQGYDQNGLLWNVEELPLNPKQFPILNELYEGLNTEFKRPSFFISNVKPGGLVNHIDHNKWGNLGIPLKGDFENTPQYFYDQFNHPVESFVVDSPVIFNTRMLHAVPRQITDTGPRWVLMMDLFEWVDKLFAKIDNKTIWTDTKNFKNA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211658_1000383

Overview

Ecosystem & Geography

Associated Families

Sequences