Scaffold Ga0211658_1000284

Overview

Basic Information

• Taxon OID: 3300020274
• Scaffold ID: Ga0211658_1000284
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14998
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (26.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.254
  • Long. (^o): -85.2248
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004688	Metagenome / Metatranscriptome	428	Y
F071636	Metagenome	122	N
F073436	Metagenome / Metatranscriptome	120	Y
F074754	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211658_100028411	F004688	N/A	MIKEHTMPCIHMNGSGEDSLRKQYNELFEAVSEAQIKLLFDTTFHQRDYYPLGDEAWDKAYQEREEVKEAMNKVYQYAKQHMHFLEYGKEPFAPFEPLPDED
Ga0211658_100028414	F071636	N/A	MNNETPTIKLTGHFNKTFSVRREEDGYKGLEYSIEWDFDKKKTRIPISTHGAIELSEVFDKLGFTQIHRES
Ga0211658_100028427	F074754	GAG	MKNTTTTTTTNVGINYKFDHALYGLSDEDLKKKLTNRVVTYYNHDESSVKNDGVRSFVIKSVDHTDHAKGSGRRYIQGEVQDLDDGGKTKFRTLHVSGITKVKGRVATAYQLAKSVF
Ga0211658_10002846	F073436	N/A	LTALPLHGMFPSDMKKHVSKKQVSTKRLLDALLRSYMETNDLKNIYNGDGSELITVDEAVKLVDGLKEEASPEQVQFESQLDTMMEEFRTVFPSSVGEAERGGGWFDLMHSIWNKHVQVELMEKYSNL