Scaffold Ga0211566_1011169

Overview

Basic Information

• Taxon OID: 3300020272
• Scaffold ID: Ga0211566_1011169
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001971 (ERX556120-ERR599127)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2353
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_137
• Coordinates
  • Lat. (^o): 14.1468
  • Long. (^o): -116.6821
  • Depth (m): 375

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007004	Metagenome / Metatranscriptome	360	Y
F009987	Metagenome / Metatranscriptome	310	Y
F010942	Metagenome / Metatranscriptome	297	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211566_10111692	F010942	AGGA	MESNKVKFCDEHQSRASETQILGIRKDIEHLKYVINELEKECEFVKDHFTTKNGDRLDDVKVLHGRIEQRQQADLEFHENVRKKVSDRFDTLDERIRQLDKWKWATWGALMMIGALVGYFFPISLK
Ga0211566_10111693	F007004	N/A	MKNIILGFCLIVFVGCANSNAYERPTVRIVGEAQMTKLPNGNYEVTPRWIKDRFNAENSMLKQLEDCREDGK
Ga0211566_10111695	F009987	AGGAG	MLGSIIGNALGLGLKIMDKIEKNSDKHSFEEFKARKKEMDKSLGDADVEGIDSMFEYLAERARGGNTGRKG