Scaffold Ga0211671_1012477

Overview

Basic Information

• Taxon OID: 3300020270
• Scaffold ID: Ga0211671_1012477
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001029 (ERX555928-ERR599042)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1704
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_098
• Coordinates
  • Lat. (^o): -25.859
  • Long. (^o): -111.6989
  • Depth (m): 188

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013897	Metagenome / Metatranscriptome	267	Y
F029784	Metagenome / Metatranscriptome	187	N
F094001	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211671_10124771	F029784	N/A	YAHPVEGYKCFANANKSQGTYYTCCDLDTREIRYVTYIYDGYFMGYYLVQSATKVAENFANCQDKIFLSSASNKWPYYKGNDNEYTIDRQYPMQYDIPSLDEVEYSYLDSLLTAGTSK
Ga0211671_10124772	F013897	AGCAGG	MNFTKDQLLALMNTIDFATDNDASYEEYTIIKSGTSDLEPIREILYNEYIHQTQ
Ga0211671_10124776	F094001	GGA	MNELSLPIDTPILQEEGLWELCTDRAYEMMKHRRQSLDDDVFYDQIKYWTIKIYQANLHLRGED