Scaffold Ga0211484_1005250

Overview

Basic Information

• Taxon OID: 3300020269
• Scaffold ID: Ga0211484_1005250
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3059
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_032
• Coordinates
  • Lat. (^o): 23.4017
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041861	Metagenome	159	N
F064097	Metagenome	129	N
F092207	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211484_10052502	F041861	AGGA	MRIKGNSNLLDPNKVHVVNAYTGKVYAEFEMDIDARQYMRNHLLKETSAPADDDQLIPKIWVYDARGAETSSF
Ga0211484_10052504	F092207	AGGTGG	MPRPNKYLYLYVVQGNYGGHGWEDLAESESYQEARYNLREYRISSGPAPHRIIKRREPNPAYFESRRELWLPV
Ga0211484_10052509	F064097	GGAG	MFSFLFYQEDIPSKGYRAGDLKPGYAVAAMFLCFLAMAYLEGLEQLPH