NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211484_1000942

Scaffold Ga0211484_1000942


Overview

Basic Information
Taxon OID3300020269 Open in IMG/M
Scaffold IDGa0211484_1000942 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8362
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_032
CoordinatesLat. (o)23.4017Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006793Metagenome364Y
F012584Metagenome279Y
F016820Metagenome244Y
F024809Metagenome204Y
F047122Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0211484_10009421F024809N/AMNYSQKVLFDDWISKCPIEGVFVDEPVSQVQMDDGRVGYLVKVFLTIDKEDWEQNQSPPGFSENLPSQNRL
Ga0211484_100094212F012584N/AMKLRPKTECFRPKLPENTFELNEDSLPTLGDSDPWGKIMVWRKDVGWSVIQLHDVVQFITMKHTHWTYTPYFPYNKSVTE
Ga0211484_100094213F016820N/AMTKKEFSYIVISSSGDKVEEIHGVYKDVEGACYGARSALFTLFPKHGDEAKIIRCEIISTEEAKKQHEDSKPKDIFEKADCKDGYCPLPTQQVS
Ga0211484_100094214F006793N/AMTNYRSTNEEKEQRINEAADELAKGKRAMDVSKKLAKKYSVSIQQAREYVRLAKPVLTESISPNDRAYIFSKVMSCLEQDRLDARKDENLKDQTKSTAGMVKMVSLLTSIDQVGSWDSAYDQHLFKNFSEVKKKIKYNDLDSLDDSLPEGEIPF
Ga0211484_100094216F047122GAGGVKCPKCGNKAKASATKFIEYSHSQRRIRTCDCGYKFITHEVIEPDKQDFGKHSKQKKKEYYRKVLLELIDDLDGRTYLDTPKPQV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.