Scaffold Ga0211484_1000637

Overview

Basic Information

• Taxon OID: 3300020269
• Scaffold ID: Ga0211484_1000637
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10294
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_032
• Coordinates
  • Lat. (^o): 23.4017
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004144	Metagenome / Metatranscriptome	451	Y
F007002	Metagenome	360	N
F087292	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211484_10006375	F004144	AGG	MRNIFKESKYHLEVETGWTYWFHLKHSLVNSYKLIKISFKSLVHGLFPFIWKSDAPRGVIILYHEIMKIQHIKKLDKLRKYPKNERYISNDTE
Ga0211484_10006376	F007002	N/A	MNDTYLTILNSYGDIVELDYQFDVSSIIYELKSIDKWMDGSNNKKGLTLTGSVDDLELTKRNDCTINDNLKKCPSLIEFFKLWNSLAKCHAVNMNSGSFFRLHRDAYKTTQQMRIFIPLNKTELHEFAFIYDKNVVELKAGRAYLLNTKKQHGSFAMVDDIYHILMGIYINPHNFKVVTNLLPNCIDHE
Ga0211484_10006378	F087292	AGG	MNCQHYFKKLNKFSVCAFQAEKGCIEVEPRSESCGIYHYVFYGSAKIGKPFESEFEIVKKGDFFDMKDYLHQPRLYEALEDFYVWGFNTFPNEDWDARLLTDESFTVDKDSVLICLDGRPVVNDISLRRFDYGELSTEKSYDVKLNDGVIALFTRSK