Scaffold Ga0211484_1000248

Overview

Basic Information

• Taxon OID: 3300020269
• Scaffold ID: Ga0211484_1000248
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556080-ERR599041)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16620
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (48.72%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_032
• Coordinates
  • Lat. (^o): 23.4017
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078835	Metagenome	116	N
F090511	Metagenome	108	N
F092220	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211484_100024817	F092220	GGA	MIMEPVKTIEPITEKDEIQKFQDVKEQVFEEYADYSLNKLYNFNELLIDTIHQLQFKQMAVQELITHRLDNICPKEKTN
Ga0211484_100024834	F090511	N/A	MLSPFKRKILQRMGLNHVAYHGNKDCNKDWLNGYFQAKKDLEMQLNQMRITTDDLD
Ga0211484_10002486	F078835	N/A	MDKKDQLTPEEYKRVIHVITHFQLGSRVNDFKTIKAKLKRQLASLENNGWYSK